2 Activation: An aliquot of 19.5μl MMP-13 proenzyme is mixed with 0.5µl APMA solution and the mixture is incubated for 90 min. at 37°C.
3 Assay protocol: The activity of MMP-13 is measured fluorimetrically with a synthetic internally quenched fluorescent substrate according to Knight et al. [1].An excitation wavelength of 328nm and an emission wavelength of 393nm are set in an appropriate fluorimeter. The instrument is calibrated with the unquenched peptide Mca-Pro-Leu at a concentration corresponding to between 2 and 10% hydrolysis of the protease substrate. Kinetic reactions are conveniently carried out in a constant volume of 2.5ml. The substrate Mca-Pro-Leu-Gly-Leu-Dpa-Ala-Arg is diluted in peptide hydrolysis buffer to a concentration of 0.8µM and equilibrated at a temperature of 37°C. Aliquots of 1 to 2µl of the activation mixture are than added and the increase in fluorescence is recorded over a time interval between 2 and 12 min. Activity units per ml enzyme solution are calculated according to the following equation:
Activity (U/ml) = (CMca-Pro-Leu/FMca-Pro-Leu) x (ΔFMca-Pro-Leu-Gly-Leu-Dpa-Ala-Arg/Venzyme) x Vtotal
CMca-Pro-Leu: Concentration of Mca-Pro-Leu used for calibration of the fluorimeter (mmoles/ml)FMca-Pro-Leu: Fluorescence of Mca-Pro-Leu at the concentration CMca-Pro-Leu used for fluorimeter calibrationΔFMca-Pro-Leu-Gly-Leu-Dpa-Ala-Arg: Change in fluorescence during peptide hydrolysis per minVtotal: Volume of peptide hydrolysis reaction (2.5ml)Venzyme: Volume of added enzyme (0.001 to 0.002ml)Due to autoproteolytic activity minor bands of activated enzyme may be visible in the preparation.[1] A novel coumarin-labelled peptide for sensitive continuous assays of the matrix metalloproteinases: C.G. Knight, et al.; FEBS Lett. 296, 263 (1992)
Swiss-Prot link P45452: MMP-13 (human) (precursor)AfCS Signalling Gateway link A001465: MMP-13 (mouse)
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